Developing and characterising Ricinus communis SSR markers by data mining of whole-genome sequences
作者: Meilian TanKun WuLei WangMingfang YanZhidan ZhaoJing XuYang ZengXuekun ZhangChunling FuJianfeng XueLijun WangXingchu Yan
作者单位: 1Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture
2College of Life Sciences, Hubei University
刊名: Molecular Breeding, 2014, Vol.34 (3), pp.893-904
来源数据库: Springer Nature Journal
DOI: 10.1007/s11032-014-0083-6
关键词: Data miningMicrosatellitePhylogenetic relationshipPolymorphismRicinus communis L.SSR development
英文摘要: Abstract(#br) Ricinus communis is a versatile industrial oil crop that is cultivated worldwide. Genetic improvement and marker-assisted breeding of castor bean have been slowed owing to the lack of abundant and efficient molecular markers. As co-dominant markers, simple sequence repeats (SSRs) are useful for genetic evaluation and molecular breeding. The recently released whole-genome sequence of castor bean provides useful genomic resources for developing markers on a genome-wide scale. In the present study, the distribution and frequency of microsatellites in the castor bean genome were characterised and numerous SSR markers were developed using genomic data mining. In total, 18,647 SSR loci at a density of one SSR per 18.89 Kb in the castor bean genome sequence (representing...
全文获取路径: Springer Nature  (合作)
影响因子:3.251 (2012)

  • whole 全部的
  • mining 矿业
  • genome 基因组
  • markers 时标
  • communis 普通的
  • SSR Secondary Surveillance Radar