GAAP: Genome-organization-framework-Assisted Assembly Pipeline for prokaryotic genomes
作者: Lina YuanYang YuYanmin ZhuYulai LiChangqing LiRujiao LiQin MaGilman Kit-Hang SiuJun YuTaijiao JiangJingfa XiaoYu Kang
作者单位: 1Chinese Academy of Sciences
2Chinese Academy of Medical Sciences & Peking Union Medical College
3Suzhou Institute of Systems Medicine
4Liaoning University
5Beijing SpeedyCloud Technologies Co., Ltd.
6Beijing Geriatric Hospital
7South Dakota State University
8The Hong Kong Polytechnic University
刊名: BMC Genomics, 2017, Vol.18 (1)
来源数据库: Springer Journal
DOI: 10.1186/s12864-016-3267-0
关键词: Core-gene-defined Genome Organizational Framework (cGOF)ScaffoldingRearrangementProkaryotic genome
英文摘要: Next-generation sequencing (NGS) technologies have greatly promoted the genomic study of prokaryotes. However, highly fragmented assemblies due to short reads from NGS are still a limiting factor in gaining insights into the genome biology. Reference-assisted tools are promising in genome assembly, but tend to result in false assembly when the assigned reference has extensive rearrangements.
原始语种摘要: Next-generation sequencing (NGS) technologies have greatly promoted the genomic study of prokaryotes. However, highly fragmented assemblies due to short reads from NGS are still a limiting factor in gaining insights into the genome biology. Reference-assisted tools are promising in genome assembly, but tend to result in false assembly when the assigned reference has extensive rearrangements.
全文获取路径: Springer  (合作)
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影响因子:4.397 (2012)

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关键词翻译
关键词翻译
  • prokaryotic 原核生物的
  • GAAP 公认会计原则
  • genome 基因组
  • sequencing 排序
  • extensive 广泛的
  • genomic 染色体组的
  • assembly 组装
  • Pipeline 管道
  • organization 组织
  • framework 构架