Scaling bioinformatics applications on HPC
作者: Mike MikailovFu-Jyh LuoStuart BarkleyLohit ValleruStephen WhitneyZhichao LiuShraddha ThakkarWeida TongNicholas Petrick
作者单位: 1US Food and Drug Administration
2U.S. Food and Drug Administration
刊名: BMC Bioinformatics, 2017, Vol.18 (14)
来源数据库: Springer Nature Journal
DOI: 10.1186/s12859-017-1902-7
关键词: HPCBlastParallelizationMPIMulti-threadingBioinformaticsArray jobsNext generation sequencingGrid engineCluster
原始语种摘要: Recent breakthroughs in molecular biology and next generation sequencing technologies have led to the expenential growh of the sequence databases. Researchrs use BLAST for processing these sequences. However traditional software parallelization techniques (threads, message passing interface) applied in newer versios of BLAST are not adequate for processing these sequences in timely manner.
全文获取路径: Springer Nature  (合作)
影响因子:3.024 (2012)

  • 报文 及时的
  • bioinformatics 生物信息学
  • sequencing 排序
  • generation 世代
  • threading 穿纱
  • processing 加工
  • these 这些的
  • software 软件
  • engine 发动机
  • timely 及时的
  • message 及时的